A new study may have a big influence on what scientists feel about the way cellular processes are synchronized.
Contrary to general assumption, genes that work with other genes to build protein structures are turned on randomly and do not act in a coordinated way, say Albert Einstein College of Medicine of Yeshiva University researchers.
All cells contain protein complexes that perform essential functions, such as producing energy and helping cells divide. Assembling these multi-protein structures requires many different genes, each of which codes for one of the proteins that, collectively, form what's known as the protein complex.
Ribosomes, for example, are the vitally important structures on which proteins are synthesized. Scientists have long assumed that genes involved in making such complex structures are activated in a highly coordinated way.
"The expression of the genes that make the protein subunits of ribosomes and other multi-protein complexes is not at all coordinated or co-regulated. In fact, such genes are so out of touch with each other that we dubbed them 'clueless' genes," said Robert Singer, senior author of the study.
Gene expression involves transcribing a gene's deoxyribonucleic acid (DNA) message into molecules of messenger RNA, which migrate from the nucleus of a cell into the surrounding cytoplasm to serve as blueprints for protein construction.
To assess the coordinated expression of particular genes, Singer and his colleagues measured the abundance of messenger RNA molecules transcribed by those genes in individual cells. The messenger RNA molecules made by clusters of clueless genes exhibited no more coordination than the messenger RNA from totally unrelated genes did.
The 'clueless' genes coding for ribosomes and other multi-protein structures are referred to as housekeeping genes, since their essential tasks require them to be 'on call' 24/7, while other gene clusters remain silent until special circumstances induce them to become active.
The researchers found that these induced genes, in contrast to the 'clueless' housekeeping genes, act in an expected (well-regulated) way. For example, growing yeast cells in nutrient media containing the sugar galactose triggered the highly-coordinated expression of the three genes required to metabolize galactose.
"Our findings show that for a major class of genes - those housekeeping genes that make ribosomes, proteasomes and other essential structures - cells employ very simple modes of gene expression that require much less coordination than previously thought," said Saumil Gandhi, the lead author of the study.
"Those genes become active randomly, with each member of a functionally related gene cluster encoding a protein while having no clue what the other genes in the cluster are doing. Yet the cell somehow manages to deal with this randomness in successfully assembling these multi-protein complexes," added Gandhi.
The findings appeared in the online edition of Nature Structural and Molecular Biology.