A new method to block the activity of the fusion protein behind Ewing's sarcoma-a rare cancer found in children and young adults has been uncovered by scientists at Georgetown University Medical Center (GUMC).
In a new study, the researchers have discovered and successfully tested a small molecule that prevents the fusion protein from sticking to another protein that is critical for tumour formation.
The researchers claim that this unique interaction is especially surprising as the Ewing's sarcoma fusion protein is extremely flexible, which allows it to change shape constantly.
According to the researchers, the study could provide a model on which it would be possible to design treatment for other disorders caused by the interaction between two proteins.
The model could also be useful in cancers caused by translocations of genes, such as sarcomas and leukaemias.
Currently, the agents that work against fusion proteins inhibit a single protein to stop intrinsic enzymatic activity, for example Gleevec, which is used for chronic myelogenous leukemia (CML).
The Ewing's sarcoma fusion protein, known as EWS-FLI1, lacks enzymatic activity, "and this difference is why our work is significant," said Toretsky.
The researchers are the first to make a recombinant EWS-FLI1 fusion protein, and use it to discover that the fusion protein stick to another protein, RNA helicase A (RHA)-a molecule that forms protein complexes in order to control gene transcription.ater, they searched for a small molecule that would bind on to EWS-FLI1 from a library of 3,000 small molecules.
The researchers zeroed in on one, called NSC635437, and further discovered that it could stop EWS-FLI1's fusion protein from sticking to RHA.
The researchers believe that this is a wonderful discovery because scientists have long believed that it is not possible to block protein-protein interactions given that the surface of many of these proteins are slippery - much too flexible for a drug to bind to.
"We may be able to use this strategy to attack proteins we thought to be impervious to manipulation," said the researchers.
The study has been published online in Nature Medicine.