Wildlife species that are more prone to flaviviruses such as Zika, West Nile, dengue and yellow fever have now been found. The researchers were able to make this discovery using a machine learning model.
After collecting data and comparing it with every known mammal and bird species on Earth, scientists from the University of California, Davis, have identified wildlife species that are the most likely to host flaviviruses such as Zika, West Nile, dengue and yellow fever. Flaviviruses are known to cause major epidemics and widespread illness and death throughout the world.
The resulting "hot spot" maps show regions of the world with a high diversity of potential wildlife hosts of flaviviruses -- viruses mostly spread by mosquitoes and ticks. These include regions where flaviviruses have not been detected but that have wildlife species with the potential to harbor them.
"Tomorrow, if there's an outbreak anywhere in the world, we now know which wildlife species are most likely to be infected in addition to humans," said lead author Pranav Pandit, a postdoctoral scholar with the UC Davis One Health Institute's EpiCenter for Disease Dynamics in the School of Veterinary Medicine.
PREDICTING POTENTIAL HOSTS
The findings are reported in a recent study published in the journal Nature Communications.
Recently Zika virus emerged and continues to circulate in South America and Southeast Asia. The study predicts potential wildlife hosts in these regions with the ability to maintain Zika virus transmission in nature.
There is also rising concern that Japanese encephalitis virus will emerge and establish in Europe. The study identifies Europe as one of the regions with a high richness of potential Japanese encephalitis hosts, including many common bird species.
For the study, researchers collected all the published data on wildlife species that have tested positive for flaviviruses. They identified important host traits, such as environmental and physiological features. Then they used a machine-learning model that considered the roughly 10,400 avian and 5,400 mammal species in order to identify the most likely species to host viruses.
The model predicted hundreds of previously unobserved host species. For example, it predicted 173 host species for dengue virus, of which 139 have not been previously recognized.
HELPING HUMANS AND OTHER PRIMATES
Co-leading author and UC Davis professor Christine Kreuder Johnson said the modeling work can help researchers identify which primate species could be potential virus hosts. For example, the model indicated that primates are the main hosts of Zika and yellow fever, but only nine of the 21 primate species predicted to be hosts have been detected with either of those viruses due to limited surveillance activities among these species to date.
UC Davis One Health Institute scientists have established noninvasive sampling techniques for primates, such as collecting saliva from sticks and plants chewed by primates or from ropes coated with strawberry jam. But flaviviruses can be difficult to detect, especially in wildlife.
"We needed this modeling technique to help us understand the most likely hosts for these viruses in their natural habitat," said Johnson, director of the EpiCenter for Disease Dynamics. "That's important for both global health and wildlife conservation. Many of these primates are already endangered, and these diseases burden an already strained population."