HIV forces cells to spread the virus to other cells by a process which can now be decoded using a computer model. A key part of HIV's success is a nasty little trick to propagate itself inside the body. Once HIV has infected a cell, it forces the cell to make a little capsule out of its own membrane, filled with the virus.
‘Once HIV has infected a cell, it forces the cell to make a little capsule out of its own membrane, filled with the virus.’The capsule pinches off a process called "budding" and floats away to infect more cells. Once inside another unsuspecting cell, the capsule coating falls apart, and the HIV RNA gets to work.
Tweet it Now
Scientists knew that budding involves an HIV protein complex called Gag protein, but the details of the molecular process were murky.
"For a while now we have had an idea of what the final assembled structure looks like, but all the details in between remained largely unknown," said Gregory Voth, the Haig P. Papazian Distinguished Service Professor of Chemistry and corresponding author on the paper.
Since it's been difficult to get a good molecular-level snapshot of the protein complex with imaging techniques, Voth and his team built a computer model to simulate Gag in action.
Simulations allowed them to tweak the model until they arrived at the most likely configurations for the molecular process, which was then validated by experiments in the laboratory of Jennifer Lippincott-Schwartz at the National Institutes of Health and the Howard Hughes Medical Institute Janelia Research Campus.
"It really demonstrates the power of modern computing for simulating viruses," Voth said.
The team plans next to study the structures of the Gag proteins in the HIV virus capsule after budding, he said.